Tag: E. coli

^{Type
post

Author
Rob Stadler

Date
February 4, 2026

Categories
Biology
Evolution
Genetics
Tagged
, adenine, biochemists, E. coli, First Rule of Adaptive Evolution, fitness, fossil record, gene, gene transcription, genes, genetics, genotype, homology, information, James Tour, lactose, Michael Behe, natural selection, promoter, random mutations, regulatory control, researchers, Rice University, S. cerevisiae, tryptophan, W303, When Can I Trust What Scientists Say? (series), yeast, YouTube videos}

On Evolution, Here Is What We Can Believe with High Confidence

_{Rob Stadler
February 4, 2026

Biology, Evolution, Genetics

9}

In a pair of YouTube videos, Rice University chemist James Tour and I reviewed more than ten recent studies of experimental evolution. Read More ›

DNA sequencing result, visualisation. Researches in genetics

^{Type
post

Author
Emily Reeves

Date
January 15, 2026

Categories
Biology
Intelligent Design
Tagged
, AmiGO, biological networks, biology, computers, coordination, Darwinian evolution, data networks, datasets, E. coli, engineering, Gene Ontology, genomics, glycolysis, intelligent design, Introduction to Systems Biology, isoforms, Joel Bader, junk DNA, living systems, long non-coding RNAs, metabolomics, molecular biology, Molecular Systems Biology, mRNA, mutations, optimal design, optimism, proteins, proteomics, reductionist biology, Rube Goldberg, Ruedi Aebersold, smartphones, Systems Biology, technology, transcription network, transcriptomics, Uri Alon, Yuri Lazebnik}

Systems Biology and Intelligent Design: A Natural Fit

_{Emily Reeves
January 15, 2026

Biology, Intelligent Design

8}

My optimism comes from how powerfully top-down design has succeeded in giving us the complex systems of the modern world. Read More ›

Products from polyurethane on the exhibition stand. Industry

^{Type
post

Author
Emily Reeves

Date
November 11, 2025

Categories
Computational Sciences
Engineering
Intelligent Design
Tagged
, amino acids, bacteria, blind search, China, E. coli, engineering, enzymes, foresight, landfills, plastic, recycling, selection}

Can Protein Design Outpace Directed Evolution in Recycling Plastic?

_{Emily Reeves
November 11, 2025

Computational Sciences, Engineering, Intelligent Design

3}

What is polyurethane and where is it used? It’s a type of plastic and it is pretty much everywhere: shoes, clothes, yoga mats, mattresses, couch cushions. Read More ›

^{Type
post

Author
Andrew McDiarmid

Date
July 11, 2025

Categories
Biology
Evolution
Intelligent Design
Tagged
, Bacillus subtilis, bacteria, biological systems, biology, bioluminescence, chemotaxis, complexity, Darwin’s Black Box, E. coli, genes, intelligent design, Jonathan McLatchie, Michael Behe, musicians, proteins, Salmonella, signal transduction, sporulation, toxins}

Recurring Design Logic in Living Systems

_{Andrew McDiarmid
July 11, 2025

Biology, Evolution, Intelligent Design

2}

Architects, painters, musicians, and other creators apply recognizable patterns of thinking to their craft. Read More ›

^{Type
post

Author
Andrew McDiarmid

Date
June 8, 2025

Categories
Biology
Evolution
Intelligent Design
Tagged
, adaptations, bacteria, biology, Carolyn Hovde, Conference on Engineering in Living Systems, Dustin Van Hofwegen, E. coli, engineering, evolution, ID the Future, innovation, Jonathan Witt, Journal of Bacteriology, microbes, podcast, Scott Minnich, University of Idaho}

Engineered Complexity in the Microbial World

_{Andrew McDiarmid
June 8, 2025

Biology, Evolution, Intelligent Design

2}

Many biological “adaptations” may involve the use of innate abilities or the disruption of existing functions, rather than the creation of entirely new ones. Read More ›

^{Type
post

Author
Jonathan McLatchie

Date
November 13, 2024

Categories
Botany
Evolution
Intelligent Design
Tagged
, bacteria, bioinformatics, C. elegans, Discovery Institute, DNA, E. coli, evolution, evolutionary paradigm, fungi, genes, genomes, genomics, intelligent design, nucleotide sequences, ORfan genes, PLOS ONE, search engines}

ORFanID: An Online Search Engine for Identifying Orfan Genes

_{Jonathan McLatchie
November 13, 2024

Botany, Evolution, Intelligent Design

5}

The existence of such genes is surprising given the hypothesis of universal common descent. Read More ›

^{Type
post

Author
Jonathan McLatchie

Date
March 21, 2024

Categories
Engineering
Evolution
Intelligent Design
Tagged
, ATP hydrolysis, bacteriophages, DNA, DNA polymerase, DNA replication, Drew Berry, E. coli, early Earth, evolution, helicase, intelligent design, Irreducible Complexity, molecular machines, nanotechnology, naturalism, nucleotides, Oxford University Press, proteins, RNA, RNA world, Signature in the Cell, Stephen Meyer, topoisomerase}

The DNA Replisome: A Paradigm of Design

_{Jonathan McLatchie
March 21, 2024

Engineering, Evolution, Intelligent Design

10}

One can hardly appeal to natural selection to account for the origins of DNA replication without assuming the existence of the thing one seeks to explain. Read More ›

^{Type
post

Author
William A. Dembski

Date
March 4, 2024

Categories
Biology
Chemistry
Evolution
Intelligent Design
Origin of Life
Tagged
, bacterium, complexity, Darwinian evolution, DNA, E. coli, information, information theory, intelligent design, Kolmogorov information, Leslie Orgel, life, molecules, polymers, probability, Robert J. Marks II, Shannon information, specification, Specified Complexity Made Simple (series), The Origins of Life, Winston Ewert}

Orgelian Specified Complexity

_{William A. Dembski
March 4, 2024

Biology, Chemistry, Evolution, Intelligent Design, Origin of Life

13}

I have presented Orgel’s account of specified complexity so readers can decide which they prefer, Orgel’s or the one described in this series. Read More ›

^{Type
post

Author
Andrew McDiarmid

Date
December 13, 2023

Categories
Evolution
Intelligent Design
Tagged
, Ann Gauger, Bijan Nemati, culture, Darwinian evolution, DNA, E. coli, engineers, Eric Anderson, evolution, extinction, Idaho, Long Term Evolutionary Experiment, mutations, Richard Lenski, Scott Minnich}

Hitting the Brakes on “Rapid Evolution”

_{Andrew McDiarmid
December 13, 2023

Evolution, Intelligent Design

2}

Evolutionary biologist Richard Lenski hopes to demonstrate Darwinian evolution in action. But one humble scientist from Northern Idaho says not so fast! Read More ›

^{Type
post

Author
Brian Miller

Date
November 29, 2023

Categories
Evolution
Fine-tuning
Intelligent Design
Tagged
, amino acids, beta-lactamase, biologic institute, Brian Miller, Cambridge, Dennis Venema, designer, Douglas Axe, E. coli, Emily Reeves, enzyme, evolution, evolutionary theory, fitness landscapes, intelligent design, New Scientist, No Free Lunch theorems, preconditions, protein folds, Religions (journal), Rope Kojonen, Stephen Dilley, The Compatibility of Evolution and Design, The Compatibility of Evolution and Design (series), Unbelievable, universe}

Defending Douglas Axe on the Rarity of Protein Folds

_{Brian Miller and Casey Luskin
November 29, 2023

Evolution, Fine-tuning, Intelligent Design

17}

The following examination and defense of Dr. Axe serves as a direct, empirical test of Rope Kojonen’s design hypothesis. Read More ›